Illumina HiSeq 2500 paired end sequencing - SRA

ERX6934589: Illumina HiSeq 2500 paired end sequencing
1 ILLUMINA (Illumina HiSeq 2500) run: 326,233 spots, 71.8M bases, 23.6Mb downloads

Submitted by: Centre National de la Recherche Scientifique

Study: Population decline at distribution margins: assessing extinction risk in the last glacial relictual but still functional metapopulation of a European butterfly

PRJEB48550 • ERP132932 • All experiments • All runs

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We analyzed patterns of genetic diversity distribution at 817 loci in 136 butterflies from 31 sites using NGS to infer the genetic structure and population size changes overtime, using two methods of demographic inference (SNP frequency spectrum analyses and coalescent ABC inferences). We then characterized the climate and land-use descriptors of C. hero geographic distribution using species distribution modelling (SDM) and ordination method, and compared demographic changes to changes in climatically suitable areas.

Sample: C. hero in Jura massif

SAMEA10634784 • ERS8286634 • All experiments • All runs

Organism: Coenonympha hero

Library:

Name: unspecified

Instrument: Illumina HiSeq 2500

Strategy: AMPLICON

Source: GENOMIC

Selection: unspecified

Layout: PAIRED

Runs: 1 run, 326,233 spots, 71.8M bases, 23.6Mb

Run	# of Spots	# of Bases	Size	Published
ERR7366017	326,233	71.8M	23.6Mb	2021-11-28

ID:: 17982241

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